Installation

This is the guideline to setup the pipeline in any workstation or HPC environment. The full python package can be installed using pip.

Important

Required python version 3.10. Other versions may work, but not tested. Hence, recommend to use python 3.10.

Tip

To make life easier, both the Python and other dependencies can be installed using conda.

First, ensure you have anaconda or miniconda installed with python version 3.10.

Load installed conda module in HPC cluster

In many HPC clusters, conda may be installed already. In that case, it is recommended to read HPC cluster document and check how to load conda. In general, it can be loaded using the module to function. Load it as:

module load anaconda3

Otherwise, install it following the steps below.

Install Conda: Anaconda or Miniconda

• Install Conda: Anaconda or Miniconda
  • Overview
  • Install Miniconda in a Custom Directory
  • Install Anaconda in a Custom Directory

Create and Activate Conda

• Create and Activate Conda Environment
  • Create conda environment in default conda directory
  • Create conda environment in custom conda directory

Install MeerSOLAR

• Install MeerSOLAR
  • Install MeerSOLAR from PyPI
  • Install MeerSOLAR from source code